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Zoho Books

Making Tax Digital for VAT with Zoho Books

By Harikrishnan, Founder & Chief Zoho Consultant, Flowpeak · 10+ years in Zoho · Published · Last updated

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All VAT-registered UK businesses must keep digital records and file VAT returns through MTD-compatible software. Zoho Books is recognised by HMRC for MTD VAT. Here is how we set it up for UK clients.

Before you start

  • Your VAT registration number
  • Your VAT scheme and return periods
  • Access to your HMRC online account to authorise the connection
  • Your accountant's chart of accounts

Step 1: VAT settings

Enable VAT in Zoho Books, enter your VAT number and scheme, and check the standard, reduced and zero rates against what you sell.

Step 2: Connect to HMRC

You authorise Zoho Books to connect to HMRC from your own HMRC sign-in. We never need your HMRC password.

Step 3: Keep digital records

Every sale and purchase is recorded in Zoho Books with its VAT, and bank feeds keep records complete. Opening balances are brought in at a clean cut-over date.

Step 4: Review and submit

  • Review the VAT return in Zoho Books
  • Check it with your accountant
  • Submit it to HMRC from Zoho Books and keep the confirmation

Common mistakes

  • Wrong VAT treatment on EU and overseas customers
  • Missing bills, which understates input VAT
  • Changing posted transactions after a return is filed

MTD for Income Tax

MTD for Income Tax is being introduced for some sole traders and landlords from April 2026. Check with your accountant whether and when it applies to you.

Want help putting this into practice? Flowpeak works as a Zoho consultant for UK businesses, delivering remotely from Chennai. Book a free call to talk through your setup.

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Frequently asked questions

Is Zoho Books MTD compliant?

Yes. Zoho Books is recognised by HMRC as software for Making Tax Digital for VAT.

Can I move from Xero or QuickBooks to Zoho Books mid-year?

Yes, at a clean cut-over date, ideally the start of a VAT period, with opening balances reconciled.

How much does Zoho setup cost in the UK?

Flowpeak's Zoho CRM implementation starts at GBP 400 for a standard setup. Zoho Books and multi-app projects are quoted in writing after a free scoping call.

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